Pathogens
| Waterbody Name | Pollutant of Concern | Final Approval Date | River Basin Name |
| Big Black River (Warren) | Pathogens | 21-Sep-00 | Big Black |
| Back Bay of Biloxi and Biloxi Bay | Pathogens | 17-Jan-02 | Coastal |
| Bayou Cumbest | Pathogens | 5-May-00 | Coastal |
| Graveline Bayou | Fecal Coliform | 4-Nov-05 | Coastal |
| Jourdan River | Pathogens | 15-Dec-00 | Coastal |
| St. Louis Bay, Wolf River (Phase 2), & Jourdan River (Phase 2) | Pathogens | 2-Jul-01 | Coastal |
| Tuxachanie Creek | Pathogens | 23-Feb-00 | Coastal |
| Wolf River | Pathogens | 15-Dec-00 | Coastal |
| Bearman Creek | Fecal Coliform | 14-Oct-05 | North Independent |
| Bridge and Elam Creeks | Fecal Coliform | 23-Jan-06 | North Independent |
| Muddy Creek | Fecal Coliform | 14-Oct-05 | North Independent |
| Tuscumbia River Canal | Pathogens | 19-May-00 | North Independent |
| Upper Hatchie River | Pathogens | 8-Mar-02 | North Independent |
| Big Creek | Fecal Coliform | 31-May-05 | Pascagoula |
| Leaf River | Pathogens | 27-Apr-00 | Pascagoula |
| Leaf River below Hattiesburg | Fecal Coliform | 31-May-05 | Pascagoula |
| Bogue Chitto River | Pathogens | 16-May-00 | Pearl |
| Pearl River (Hancock) | Pathogens | 15-Dec-00 | Pearl |
| Pearl River (Marion) | Pathogens | 15-Dec-00 | Pearl |
| Chambers Creek | Fecal Coliform | 14-Oct-05 | Tennessee |
| Cedar Creek | Pathogens | 12-Apr-02 | Tombigbee |
| Town Creek | Pathogens | 24-May-02 | Tombigbee |
| Abiaca Creek | Pathogens | 29-Oct-02 | Yazoo |
| Big Sunflower River | Pathogens | 29-Oct-02 | Yazoo |
| Black Creek | Pathogens | 29-Oct-02 | Yazoo |
| Fannegusha Creek | Pathogens | 17-Jan-03 | Yazoo |
| Hickahala, James Wolf, and Senatobia Creeks | Pathogens | 17-Jan-03 | Yazoo |
| Little Tallahatchie River and Hotophia Creek | Pathogens | 17-Jan-03 | Yazoo |
| Moon Lake | Pathogens | 12-Feb-03 | Yazoo |
| Otoucalofa Creek | Pathogens | 18-Dec-02 | Yazoo |
| Yalobusha River | Pathogens | 17-Jan-03 | Yazoo |
